Flatten 1_raw_dataset submodules into plain tracked files

FocalLoRA, Should-It-Be-Executed-Or-Processed, and topicattack were
nested git repos (with an inner FocalLoRA/data/FocalLoRA/.git as well).
Drop their .git history and track the contents directly in this repo
instead of as submodules/gitlinks.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

Codes/1_raw_dataset/FocalLoRA/train.sh

@@ -0,0 +1,22 @@
+#!/bin/bash
+eval "$(conda shell.bash hook)"
+conda activate focallora
+export CUDA_VISIBLE_DEVICES="0"
+export PROJDIR="/data/local/hujk/FocalLoRA"
+cd code
+
+# Use the new dataset format
+
+python _tuning.modified.py \
+  --model_path "$PROJDIR/models/Llama-3.1-8B-Instruct/" \
+  --json_path "$PROJDIR/data/all_combined.json" \
+  --tune_path "$PROJDIR/data/focal_lora_dataset_train" \
+  --output_dir "$PROJDIR/LoraAdapter/Llama-3.1-8B-Instruct_m_t10p_sink_orig3/" \
+  --topk 10p \
+  --epochs 10 \
+  --batch_size 6 \
+  --lr 5e-6 \
+  --lambda_focus 0.1 \
+#  --lora_path "$PROJDIR/LoraAdapter/Llama-3.1-8B-Instruct_modified_0.85/batch_0" \
+#  --head_path "$PROJDIR/LoraAdapter/Llama-3.1-8B-Instruct/heads.py"
+