Flatten 1_raw_dataset submodules into plain tracked files

FocalLoRA, Should-It-Be-Executed-Or-Processed, and topicattack were
nested git repos (with an inner FocalLoRA/data/FocalLoRA/.git as well).
Drop their .git history and track the contents directly in this repo
instead of as submodules/gitlinks.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

Codes/1_raw_dataset/FocalLoRA/test_model.sh

@@ -0,0 +1,75 @@
+#!/bin/bash
+set -euo pipefail
+
+CONDA_BIN=${CONDA_BIN:-}
+if [ -z "$CONDA_BIN" ]; then
+  if command -v conda >/dev/null 2>&1; then
+    CONDA_BIN=$(command -v conda)
+  elif [ -x /opt/miniconda/bin/conda ]; then
+    CONDA_BIN=/opt/miniconda/bin/conda
+  fi
+fi
+
+if [ -n "$CONDA_BIN" ]; then
+  eval "$("$CONDA_BIN" shell.bash hook)"
+  conda activate focallora
+else
+  echo "[test_model.sh] Warning: conda not found; running in current environment." >&2
+fi
+
+export PROJDIR="/data/local/hujk/FocalLoRA"
+
+MODEL_PATH=${MODEL_PATH:-"$PROJDIR/models/Llama-3.1-8B-Instruct/"}
+DEFAULT_LORA="$PROJDIR/LoraAdapter/Llama-3.1-8B-Instruct_modified_0.01/batch_0"
+LORA_PATH=${LORA_PATH:-"$DEFAULT_LORA"}
+
+while [[ $# -gt 0 ]]; do
+  case "$1" in
+    --lora_path=*)
+      LORA_PATH="${1#*=}"
+      shift
+      ;;
+    --lora_path)
+      LORA_PATH="$2"
+      shift 2
+      ;;
+    --lora=*)
+      LORA_PATH="${1#*=}"
+      shift
+      ;;
+    --lora)
+      LORA_PATH="$2"
+      shift 2
+      ;;
+    --)
+      shift
+      break
+      ;;
+    *)
+      echo "[test_model.sh] Unknown option: $1" >&2
+      exit 1
+      ;;
+  esac
+done
+
+export COND1=${COND1:-"To make your response easy to scan, please organize your answer as exactly five numbered items (1.-5.). Use clear list formatting with each point on a separate line."}
+export COND2=${COND2:-"I prefer reading continuous text rather than bullet points. Please provide one single paragraph with no list formatting or line breaks. Make it flow naturally as prose."}
+export TASK=${TASK:-"Describe the greenhouse effect and explain how human activities, such as fossil-fuel combustion, intensify this natural process."}
+
+PYTHON_BIN=${PYTHON_BIN:-python3}
+CUDA_DEVICE=${CUDA_DEVICE:-0}
+
+CMD=(
+  "$PYTHON_BIN" "$PROJDIR/code/_testmodel.py"
+  --model_path "$MODEL_PATH"
+  --cuda_device "$CUDA_DEVICE"
+  --max_new_tokens "${MAX_NEW_TOKENS:-512}"
+)
+
+if [ -n "${LORA_PATH:-}" ]; then
+  CMD+=(--lora_path "$LORA_PATH")
+else
+  CMD+=(--lora_path "")
+fi
+
+"${CMD[@]}"